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2103.10566

On the validity of the stochastic quasi-steady-state approximation in open enzyme catalyzed reactions: Timescale separation or singular perturbation?

Justin Eilertsen, Santiago Schnell

correctmedium confidence
Category
math.DS
Journal tier
Specialist/Solid
Processed
Sep 28, 2025, 12:56 AM

Audit review

The paper identifies the Tikhonov–Fenichel parameter values π1, π2, π3 for the open Michaelis–Menten system and uses Fenichel projection to recover the sQSSA and QEA (π1 → ṡ = k0 − v s/(KM + s); π3 → ṡ = k0 − v s/(KS + s)), exactly as the model does for π1 and π3. See the listed TFPVs and the projected sQSSA/QEA formulas, including equations (19a–c), (23), and (25) . The paper also states the LNA validity indicator from Thomas–Straube–Grima (equation (14)) and argues that εS ≪ 1 alone is insufficient; one also needs small k0 (α ≪ 1), or alternatively small k2 (β ≪ 1), aligning the parameters with neighborhoods of π1 or π3, respectively . The model reproduces the same geometric reductions and goes further by providing an explicit quantitative equivalence: for any η there is δ(η) such that F(α,β) < δ and εS < δ imply proximity to π1 or π3, and conversely, proximity to π1 or π3 with εS ≪ 1 forces F = O(η). This strengthens the paper’s qualitative equivalence claim with a clean inequality argument. Minor issues: the paper’s decomposition vector for the π1 perturbation appears to have a typographical error in the ċ-component (k2eT s instead of k1eT s) in (20)/(22)/(A.3), though the projected dynamics are still stated correctly . Overall, both are correct and substantially the same proof line (TFPVs + Fenichel projection + LNA criterion), with the model adding explicit quantitative bounds.

Referee report (LaTeX)

\textbf{Recommendation:} minor revisions

\textbf{Journal Tier:} specialist/solid

\textbf{Justification:}

The manuscript gives a clear geometric account of when the stochastic sQSSA is valid for the open Michaelis–Menten mechanism: precisely near TFPVs supporting a Fenichel reduction. It unifies prior LNA-based diagnostics with singular perturbation structure. A small typographical slip in the decomposition should be corrected, and a concise quantitative lemma would sharpen the claimed equivalence. These are minor fixes; the core contribution is sound and well-motivated.